Ah well that's obviously not the issue then, I'm guessing that the other trackers I see in the tab on utorrent are something else entire then :p
If you find a
single other tracker under the "Trackers" tab for any torrent, you either did not d/l it from BakaBT (quite possible, as public .torrent files can be posted anywhere, and are good for a month) OR you accidentally added one or more tracker(s) to it. There is quite literally no other possibility.
This definitely would explain your "missing" data, by the by; some data simply doesn't go to BakaBT.
The best bet would be to remove the torrents in question from your queue and redownload them while making sure you are logged in on BakaBT.